Discover new trends and validate your findings with 1500+ datasets and 50+ cancer types.
We provide interactive online visualization of seminal cancer genomics datasets, including data from The Cancer Genome Atlas (TCGA), International Cancer Genome Consortium (ICGC), Genomic Data Commons (GDC), and UCSC RNA-seq compendium.
Xena supports virtually any functional genomics data, including SNVs, INDELs, large structural variants, copy number variation, gene-, transcript-, exon-, miRNA-, LncRNA-, protein-expressions, DNA methylation, ATAC-seq signals, phenotypic annotations, and higher-level derived genomic parameters.
|Public Xena Hubs||Samples||Data Types|
|TCGA||12,470||copy number, gene-, exon-, miRNA-, and protein-expression, somatic mutation, DNA methylation, survival, and clinical data|
|Pan-Cancer Atlas||12,591||copy number, gene-, miRNA-, and protein-expression, somatic mutation, DNA methylation, molecular subtypes, multiple curated survival endpoints|
|ICGC||17,697||copy number, gene expression, somatic mutation|
|UCSC RNA-seq compendium||19,131||TCGA, TARGET, and GTEx gene- and transcript-expression|
|GDC||20,157||TCGA and TARGET copy number, somatic mutations, gene- and miRNA-expression, DNA methylation, overall survival, and clinical data|
|TCGA ATAC-seq||404||ATAC-seq peak signal|
|Collected from the literature||*||various, study-dependent|
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