UCSC XenaXena

Getting Started

Mary Goldman26 February 2019

Beginners Tutorial

This slide-based tutorial will walk you through the basic functions of Xena.

More Advanced Tutorial

Overview of Xena

This video will show you some of Xena's functionality.

Click into Live Examples below

ERG-TMPRSS2

ERG-TMPRSS2 fusion generated by deletions in TCGA Prostate Cancer


KM plot of PAM50

KM plot of PAM50 subtypes in TCGA Breast Cancer


Copy number

Copy number 1p/19q co-deletion in a TCGA Lower Grade Glioma


TP53

TP53 gene expression and somatic mutation in TCGA Pan-cancer

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